Repository of community practices in Ocean Research, Applications and Data/Information Management
Search
Now showing items 1-10 of 39
A generic framework for individual-based modelling and physical-biological interaction.
(2018)
The increased availability of high-resolution ocean data globally has enabled more detailed
analyses of physical-biological interactions and their consequences to the ecosystem. We
present IBMlib, which is a versatile, ...
Next-generation biology: Sequencing and data analysis approaches fornon-model organisms.
(2016)
As sequencing technologies become more affordable, it is now realistic to propose studying the evolutionary history of virtually any organism on a genomic scale. However, when dealing with non-model organisms it is not ...
Benthic Terrain Modeler (BTM) 3.0, tools for understanding and classifying the benthic environment. [Sofware]
(Esri, Redlands, CA, USA, 2018)
A full tutorial with sample data is included with this zip file within the 'tutorial' directory. This self-paced training module introduces the benthic terrain modeling concepts used in the BTM, and steps users through ...
Unified Geomorphological Analysis Workflows with Benthic Terrain Modeler.
(2018)
High resolution remotely sensed bathymetric data is rapidly increasing in volume, but analyzing this data requires a mastery of a complex toolchain of disparate software, including computing derived measurements of the ...
HF Radar Activity in European Coastal Seas: Next Steps toward a Pan-European HF Radar Network.
(2017)
High Frequency Radar (HFR) is a land-based remote sensing instrument offering a unique insight to coastal ocean variability, by providing synoptic, high frequency and high resolution data at the ocean atmosphere interface. ...
The metagenomic data life-cycle: standards and best practices.
(2017)
Metagenomics data analyses from independent studies can only be compared if the analysis workflows are described in a
harmonized way. In this overview, we have mapped the landscape of data standards available for the ...
Best Practices for Quantification of Uncertainty and Sampling Quality in Molecular Simulations [Article v1.0].
(2019)
The quantitative assessment of uncertainty and sampling quality is essential in molecular
simulation. Many systems of interest are highly complex, often at the edge of current computational
capabilities. Modelers must ...
Best practice in Ecopath with Ecosim food-web models for ecosystem-based management. [In: Special Edition: Ecopath 30 years - Modelling ecosystem dynamics: beyond boundaries with EwE]
(2016)
Ecopath with Ecosim (EwE) models are easier to construct and use compared to most other ecosystem
modelling techniques and are therefore more widely used by more scientists and managers. This, how-
ever, creates a problem ...
Comparison of ten packages that compute ocean carbonate chemistry.
(2015)
Marine scientists often use two measured or modeled carbonate system variables to compute others. These
carbonate chemistry calculations, based on well-known thermodynamic equilibria, are now available in a ...
Best Practices for Scientific Computing.
(2014)
Scientists spend an increasing amount of time building and using software. However, most scientists are never taught how to do this efficiently. As a result, many are unaware of tools and practices that would allow them ...